miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|164303625|gb|ES852324.1|ES852324 GGCACGAGCTCTGCAATTTGATTTCTTTTGGAGAAATTTTTCAGTGACAAAAAAAGAAGATTTTTTTTAGTTTACCAAAG
TACTCTTCTACTGACGTTGAAACCCCAGATTTAATTCCTCGTGTAAACTTTTTTTTATAAGGGAATTTTTTGACATTTTT
TTTTGCAGGTTTGGATATTGTTACCACATGCAGGGAAACCCTAAATTACTTTTTGTTCATTTTTCTTATTTTTTTTGCAG
TGTATTTCTCTCTATTTTTAAAGGTCTAAAGACTATGTAAAGAAAGATTCTTTCAAGGAAATAGGATCATTGTTTCTTTC
GCTGGCTGGGGACAATGATCCTAACAAAGCAGTATCGTTGTATACACTCGTCTAGTTGTCAATGCACAAAGGGTCATCTA
AGTGAAGATGTGATTTTCTTAGTGTTTCAACAACTCAACTGGAATCCAAAGTTGATTGCGACTCTTTCATGCGTATGCAA
ATGGTTTGATGATCTTGCCAAGAGAGTACTATGGAAAGAATTCTGCAAAACAAGGGCCCCAAAGATGATGCTTGATCTGC
AGTCTAGTGGAAGTCACAGTGTTGATGGGAACTGGAGAGCCCTTGGAAAACTACTTATCTATTGTTCAGGTTGTAGCGGT
GGTCGCTTGTTCAATAGTGTTCAGATCCCTGGTCATTTTGTTTACAGGACCAGGTTCTCTAGGACCTCAGGGAAGAGCTT
CCTTTTACCGCAATGCCGGACTGATATTTTATATGTGTCTGACCCTTGTGAACATCTGGACCAAGGGGATGAGGGTGATG
TGGGATTTTTCCGAGGAGTTTTCAAGTCATTCTTGGTGTCCNAAGTTCGGAAGATGTTGATTGACAGGGCAGCCCAGCTT
CATCCAACAGCAGTGTGCCCTTATTGTAAGGCAAAGTTGTGGGACATGCTGCAAGCTAAGATGATACACCAAGTGCAAGC
TGTAGGTTGGGTGCTTATGAGGATTGTATAGAGGATTACGTGTTGCTAAATGGTCATATGCTTGGTCATCTGCCCCCTTT
TTGCCATGGCCTGATTCTGAAGAAGGATCTGAATCAAAATGAAAATTTGATGCAAAACCGTTTTGTTGGCATTTCCGGGG
GGGGGATGATTTCCCTGGGGGAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAGGGAAAAATACAAAACCCTGGGTTTCTC
AAAAACCGGAAAATACAACAAACCAAAAAATCCGCCCCCCCCTTCCCTCTCGGGGGGGGGTTGGGGGGGTGTTTTTTTTG
CTAAAAAACCCCCTCCCCCCCAAAAGAGGGTGTTTT




Most similar to sp|Q9FLZ8|EDL2_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9FLZ8|EDL2_ARATH EID1-like F-box protein 2 OS=Arabidopsis
           thaliana GN=EDL2 PE=2 SV=1
          Length = 249

 Score =  355 bits (911), Expect(2) = e-104
 Identities = 164/207 (79%), Positives = 183/207 (88%), Gaps = 1/207 (0%)
 Frame = +2

Query: 335 MILTKQYRCIHSSSCQCTKGHLSEDVIFLVFQQLNWNPKLIATLSCVCKWFDDLAKRVLW 514
           MI+ KQYRCIHS++C CTKGHLSE+V+FL+ Q LNWNP +IATLSCVCKWFDDLAKR+LW
Sbjct: 1   MIIAKQYRCIHSATCHCTKGHLSEEVLFLMVQHLNWNPNVIATLSCVCKWFDDLAKRLLW 60

Query: 515 KEFCKTRAPKMMLDLQSSGSHSVDGNWRALGKLLIYCSGCSGGRLFNSVQIPGHFVYRTR 694
           KEFC+ RAPKMM DLQSSGSHSVDG+WRALGKLLIYCSG S G LFN VQI GHFV+RTR
Sbjct: 61  KEFCRARAPKMMSDLQSSGSHSVDGSWRALGKLLIYCSGSSKGGLFNDVQISGHFVHRTR 120

Query: 695 FSRTSGKSFLLPQCRT-DILYVSDPCEHLDQGDEGDVGFFRGVFKSFLVSXVRKMLIDRA 871
           FSRTSG+SFL PQCRT DILYVSDPCEHLDQG++GD+GFFRG+FKSF +S VRK+LI + 
Sbjct: 121 FSRTSGRSFLPPQCRTDDILYVSDPCEHLDQGEDGDLGFFRGIFKSFSMSKVRKLLIKKG 180

Query: 872 AQLHPTAVCPYCKAKLWDMLQAKMIHQ 952
              HPT VCPYCKAKLW MLQAKMI Q
Sbjct: 181 TPFHPTEVCPYCKAKLWSMLQAKMIPQ 207



 Score = 47.8 bits (112), Expect(2) = e-104
 Identities = 22/25 (88%), Positives = 22/25 (88%)
 Frame = +1

Query: 952  SASCRLGAYEDCIEDYVLLNGHMLG 1026
            SASCRLGAYED IE YV LNGHMLG
Sbjct: 208  SASCRLGAYEDSIEYYVCLNGHMLG 232


>sp|Q9LF38|EDL1_ARATH EID1-like F-box protein 1 OS=Arabidopsis
           thaliana GN=EDL1 PE=2 SV=1
          Length = 293

 Score =  360 bits (925), Expect(2) = e-104
 Identities = 166/207 (80%), Positives = 182/207 (87%), Gaps = 1/207 (0%)
 Frame = +2

Query: 335 MILTKQYRCIHSSSCQCTKGHLSEDVIFLVFQQLNWNPKLIATLSCVCKWFDDLAKRVLW 514
           MIL KQY C HS SCQCTKGHL+EDV+ LVFQ LNWNPKL+ATLSCVC+WFDD AKRVLW
Sbjct: 1   MILPKQYCCTHSPSCQCTKGHLNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLW 60

Query: 515 KEFCKTRAPKMMLDLQSSGSHSVDGNWRALGKLLIYCSGCSGGRLFN-SVQIPGHFVYRT 691
           KEFCKTRAPKMMLDLQSSGSH +DGNWRALGKLLIYCSGC+ G LFN SVQIPGHFVYRT
Sbjct: 61  KEFCKTRAPKMMLDLQSSGSHCIDGNWRALGKLLIYCSGCTQGGLFNSSVQIPGHFVYRT 120

Query: 692 RFSRTSGKSFLLPQCRTDILYVSDPCEHLDQGDEGDVGFFRGVFKSFLVSXVRKMLIDRA 871
           RFSRT G+S L PQCRTD+LYV DPCEHLDQG+EGDVG FRG+FKSF  S VRK++I++A
Sbjct: 121 RFSRTLGRSLLPPQCRTDVLYVCDPCEHLDQGEEGDVGLFRGIFKSFPTSKVRKVIINKA 180

Query: 872 AQLHPTAVCPYCKAKLWDMLQAKMIHQ 952
              HP+ VCPYCKAKLW MLQAK+I Q
Sbjct: 181 VPFHPSEVCPYCKAKLWSMLQAKIIPQ 207



 Score = 41.2 bits (95), Expect(2) = e-104
 Identities = 26/55 (47%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +1

Query: 952  SASCRLGAYEDCIEDYVLLNGHMLG--HLPPF--CHGLILKKDLNQNENLMQNRF 1104
            SA  RL AYEDCIE +V LNGH+LG   L P       I  +D N  E    N F
Sbjct: 208  SACIRLEAYEDCIEYFVCLNGHLLGICTLAPLSDSEDAIPSEDNNHTEKKQDNGF 262


>sp|Q93ZT5|EDL3_ARATH EID1-like F-box protein 3 OS=Arabidopsis
           thaliana GN=EDL3 PE=2 SV=1
          Length = 272

 Score =  157 bits (398), Expect = 1e-37
 Identities = 75/184 (40%), Positives = 110/184 (59%), Gaps = 2/184 (1%)
 Frame = +2

Query: 401 SEDVIFLVFQQLNWNPKLIATLSCVCKWFDDLAKRVLWKEFCKTRAPKMMLDLQSSG-SH 577
           +E V+ LVF+ ++W+   + T++ + + F  +A+R+LW+  C  RAP M+  L     S 
Sbjct: 36  NERVLVLVFESISWDIHTLCTIASLSRRFCAIARRILWRRLCVNRAPGMVAALSGEDPSG 95

Query: 578 SVDGNWRALGKLLIYCSGCSGGRLFNSVQ-IPGHFVYRTRFSRTSGKSFLLPQCRTDILY 754
            +DG W AL KL+ +C G    R FN  Q   GHF   +RFS+TSG+ FL   CR D+LY
Sbjct: 96  RIDGGWHALAKLMFFCGGGESTRYFNLSQPTSGHFACESRFSKTSGRFFLPKNCRRDLLY 155

Query: 755 VSDPCEHLDQGDEGDVGFFRGVFKSFLVSXVRKMLIDRAAQLHPTAVCPYCKAKLWDMLQ 934
           +SDPCEH   G +  +G FRGVF+ F+ S  R+ L+ R A L     CPYC  ++W M  
Sbjct: 156 MSDPCEHQAVGGDEHLGVFRGVFREFMRSKTRECLVRRQAALEEKVRCPYCGGRVWSMTA 215

Query: 935 AKMI 946
           A+++
Sbjct: 216 ARLV 219